PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 624aa    MW: 69707.7 Da    PI: 6.5993
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2401e-73204152349
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+   ++++ l   ++ p+qRl + ++  La+rl++s ++l  al  ps+    + s+  aa++ f+++ P+l  +
  OGLUM11G02230.1  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQRLSTIIVDSLAHRLLSSIQGLPGALiDPSDYF--EKSTLRAARHNFFKLNPYLSTG 110
                      6789**********************9876.5667*******************9999998874444443..35555567778*********** PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      ++t N aI+ea+e e    + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l  +++ L+k Ae+lgv+f+f   v
  OGLUM11G02230.1 111 FVTNNWAIMEAMEDEkvdfQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLADMQSLLSKKAESLGVSFHFIS-V 199
                      **************9999899******8653389***************************....9**************************.7 PP

             GRAS 183 akrledleleeLrvkp....gEalaVnlvlqlhrll.........................................desvsleserdevLklv 231
                        rle+l++++Lr       g a+a++++lq+hrll                                           s  +++   ++L+++
  OGLUM11G02230.1 200 IGRLETLDFSNLRSTFqikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAI 293
                      99**********54444555*******************************************************98666777778899***** PP

             GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                      + l+P+++ ++eq+adhn+  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+
  OGLUM11G02230.1 294 RALKPNIMLIMEQDADHNTLLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEES 387
                      ****************************************77654444456******************************************* PP

             GRAS 323 GFkpvplsekaakqaklllrkvk.sdgy 349
                      GF++v+ls +a  ++ l +r  +    y
  OGLUM11G02230.1 388 GFHNVQLSFSAIREVGLSVRGNYrAADY 415
                      ************9999999988755445 PP
2GRAS70.53.2e-224785862110
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +    +  a++  ++v P+lk++
  OGLUM11G02230.1 478 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKLA 570
                      679*******************************9*****************************888887544.44446778899********* PP

             GRAS  95 hltaNqaIleavegee 110
                      +lt+N+aIlea+ege+
  OGLUM11G02230.1 571 YLTTNHAILEAMEGES 586
                      *************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.9961419IPR005202Transcription factor GRAS
PfamPF035143.5E-7120415IPR005202Transcription factor GRAS
PROSITE profilePS5098516.497451624IPR005202Transcription factor GRAS
PfamPF035141.1E-19478586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MMHGLWVQDQ GVVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQRLST  60
IIVDSLAHRL LSSIQGLPGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTNNWAIME  120
AMEDEKVDFQ VVHIVDLSCS AAHPWQWLKL LDDFHGRPGG APELYLTVLH DDNDFLADMQ  180
SLLSKKAESL GVSFHFISVI GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN  240
LSSTSIAQLQ KMANFTQPKQ MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI  300
MLIMEQDADH NTLLFRDRFN EVLNYYAALF DCFHAVAAAN PGRTDERLRV ERMILREEIK  360
NILVCEGVHR HERHERLDQW AMHMEESGFH NVQLSFSAIR EVGLSVRGNY RAADYIQISH  420
SGCSVQHMSG SSRGMFQDDM LSSATSSPAS SVYSPSPSPS NGSWVQELSH DQQSVRLIGL  480
LYQCAAEVSA GSFDRANLCL EHITQLASLD APHALQRLAA VFADALARKL LNLIPGLSRA  540
LLSSANSADA HLVPVARRHM FDVLPFLKLA YLTTNHAILE AMEGESYENY LFLYIDLNLK  600
IANSMYAGNT LTTVEVYRRP TAFY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0E0BF450.0A0A0E0BF45_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-62scarecrow-like 3