PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G02250.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 76aa    MW: 8782.79 Da    PI: 8.2452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G02250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.92.3e-08243336374
             GRAS 336 qaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                      +a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  OGLUM11G02250.1   2 EARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 43 
                      6999******8888****884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.9E-6243IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MEARKLLQSC GWAGPYEVRH DAGGHGFFFC WHKRPLYAVT AWRPAASRRG HTRSTKEISA  60
DNEQQMNDTY IQETID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235274e-82AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence.
GenBankAC1514804e-82AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence.
GenBankAP0149674e-82AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankFQ3779474e-82FQ377947.1 Oryza glaberrima chromosome 12.
GenBankFQ3780344e-82FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616659.11e-33scarecrow-like protein 3
TrEMBLA0A0E0BF471e-51A0A0E0BF47_9ORYZ; Uncharacterized protein
STRINGOGLUM11G02250.12e-52(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-09scarecrow-like 3