PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03510.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 900aa    MW: 97751.4 Da    PI: 6.2606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747057421355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  OGLUM11G03510.1 705 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 742
                      67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-306162IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.493692741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-4705754IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGTANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVV LENKSFMTHA KKLCSQLNNR SSMVVSSSVK  180
NSSSQQGRSR PLHGASNVQS TENRSKLFSQ FPVTCEQYNH PDTMAVSGST SLNACMNGSL  240
LKIALLNGQA VREHIVYSKP DVRFIQQVYR DGQLGSNAQS IAMSSDLISS SLRSVQKQPL  300
LMNNISQLEY GDSAETSADL RKNVLLKPPV CLDPFIHDRN INISHGITEV SNVINDHGNF  360
DFLSGGARVV RANLCTSATS QVLDRRSHSV SGMLLHREPI VSCEVPQSSE FSTKMGSLER  420
GSFQISSAPS SESDVQISNG LNTSISRENQ LSVSNHICQD QKINGVNDLS ATLSTERMNN  480
MDGCKPPGLS LERTSPLFME QSVENDLFDI LGPQFHHLCH NAGADLVPWT DAKPESSDRD  540
VPESSIHADS APLFSSRDNE LYSGIFSDTD QLLDAVISNV NPAGKQSSDD SASCKTSLTD  600
IPATSYLCSK EMKQCGSSGV PSVLIKNESA QFIKQPCLAE NAEDGCLSQN NGMHKSQIRL  660
WIESGQSMKC ESASASNSKG LDTPSKANRK RSRPGESPKP RPKDRQLIQD RIKELREMVP  720
NGAKCSIDAL LEKTVKHMLF LQSVTKHADK LKDSTESKIL GSENGPVWKD YFEGGATWAF  780
DVGSQSMTCP IIVEDLDRPR QMLVEMICED RGIFLEIADF IKGLGLTILR GAMEARKSKI  840
WARFTVEANR DVTRMEIFLS LVRLLEPNCD SSGAAENANN VNMPLGLVCQ PVIPATGRIQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0BFL20.0A0A0E0BFL2_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03510.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-54conserved peptide upstream open reading frame 7