PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G03790.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 590aa    MW: 66247.5 Da    PI: 7.3622
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G03790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.61.2e-26259355186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d
  OGLUM11G03790.1 259 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 352
                      7*********************8744455667777**********************************************55*********** PP

         trihelix  84 qle 86 
                      +++
  OGLUM11G03790.1 353 HMN 355
                      996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-20257380No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSRE YLPLPIHCSR  60
AVFARCRATG EREVARRQAA EGRQRSCGSR QGRLGGLQAV AAVGQRGSSR WRANKLYSCA  120
SSCTPVSILY VTNKKLKCLG DRFGEMEGSN PPGNMTQGPS YGSLDLHGIS KQMHPPNSGN  180
QGFNQPQIPG NFTIPMDRVT EPDNISDGVQ LGQHGKIAHH HHHHIHHSKN HGSDEEEHDM  240
NEDAADGKDK KGSPWHRMKW TDSMVKLLIT AVSYTGEDPG ADLGGGRRNY SMMQKKGKWK  300
AISKVMGERG CHVSPQQCED KFNDLNKRYK RLTDILGRGT ACNVVENHSL LDHMNISEKM  360
KEDARKILNS KHLFYEEMCS YHNNNRISLP EDPALQQSLQ LALRCKEDND FMRHASGDAE  420
LDDDQSEDSD YEENEEEHRA VDTNIRGPSM HKRMWHVVDH GDVGFVTSCS NDGSGRSDPY  480
DVLDINKPFP DGSDLALVQK DLALKAAEIQ KHRLQIETKA VQLAKQRLKW EMFRKNKDLE  540
LEKLALENEQ MMLQNKRLQI NSIQDRGELF LTMNAEVKSK CGGLASQMAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205330.0AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0uncharacterized protein LOC4349866 isoform X1
TrEMBLA0A0E0BFP80.0A0A0E0BFP8_9ORYZ; Uncharacterized protein
STRINGOGLUM11G03790.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.19e-86sequence-specific DNA binding transcription factors