PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G03790.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 520aa MW: 58521.7 Da PI: 6.4747

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G03790.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.9	1e-26	192	288	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d OGLUM11G03790.2 192 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 285 7*******************8744455667777******************************************55********* PP trihelix 84 qle 86 +++ OGLUM11G03790.2 286 HMN 288 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-20	190	313	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSLY SCASSCTPVS 60 ILYVTNKKLK CLGDRFGEME GSNPPGNMTQ GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ 120 IPGNFTIPMD RVTEPDNISD GVQLGQHGKI AHHHHHHIHH SKNHGSDEEE HDMNEDAADG 180 KDKKGSPWHR MKWTDSMVKL LITAVSYTGE DPGADLGGGR RNYSMMQKKG KWKAISKVMG 240 ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG RGTACNVVEN HSLLDHMNIS EKMKEDARKI 300 LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ SLQLALRCKE DNDFMRHASG DAELDDDQSE 360 DSDYEENEEE HRAVDTNIRG PSMHKRMWHV VDHGDVGFVT SCSNDGSGRS DPYDVLDINK 420 PFPDGSDLAL VQKDLALKAA EIQKHRLQIE TKAVQLAKQR LKWEMFRKNK DLELEKLALE 480 NEQMMLQNKR EFTLKLGELF LTMNAEVKSK CGGLASQMAM

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSLY SCASSCTPVS  60
ILYVTNKKLK CLGDRFGEME GSNPPGNMTQ GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ  120
IPGNFTIPMD RVTEPDNISD GVQLGQHGKI AHHHHHHIHH SKNHGSDEEE HDMNEDAADG  180
KDKKGSPWHR MKWTDSMVKL LITAVSYTGE DPGADLGGGR RNYSMMQKKG KWKAISKVMG  240
ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG RGTACNVVEN HSLLDHMNIS EKMKEDARKI  300
LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ SLQLALRCKE DNDFMRHASG DAELDDDQSE  360
DSDYEENEEE HRAVDTNIRG PSMHKRMWHV VDHGDVGFVT SCSNDGSGRS DPYDVLDINK  420
PFPDGSDLAL VQKDLALKAA EIQKHRLQIE TKAVQLAKQR LKWEMFRKNK DLELEKLALE  480
NEQMMLQNKR EFTLKLGELF LTMNAEVKSK CGGLASQMAM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120533	0.0	AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBank	AK101154	0.0	AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615140.1	0.0	uncharacterized protein LOC4349866 isoform X1
Refseq	XP_015615141.1	0.0	uncharacterized protein LOC4349866 isoform X1
TrEMBL	A0A0E0BFP9	0.0	A0A0E0BFP9_9ORYZ; Uncharacterized protein
STRING	OGLUM11G03790.1	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-86	sequence-specific DNA binding transcription factors