PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G04100.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 413aa MW: 43294.4 Da PI: 9.0391

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G04100.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.5	1.3e-06	194	217	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdC+++F +++L+ H +t H OGLUM11G04100.1 194 FSCPDCDEVFVKPDSLELHRSTrH 217 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.349	194	222	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	217	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	7.91E-16	219	412	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.3E-5	340	411	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS 60 ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA 120 SSSFNSVMTA ATSATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC 180 HSVLDPRTLA AVVFSCPDCD EVFVKPDSLE LHRSTRHAVS ELGADDTSRN IVEIIFQSSW 240 LKKNAPVCRI ERILKVQSSD KTIKRFEQHK EAVKEKARSA GDEAGRNPRC VADGNELLRF 300 HCTTFACSLG LAGGTALCCA SSVDGNGRIT TMATSGRAHD TAEVSPDGEK RAMLVCRVVA 360 GRVKKLHSSN SSEDHDCDSV SPCSEGVYSD LDELFVFSPR AILPCFVVIY SGY

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MEASAAKEKD KGGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS  60
ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA  120
SSSFNSVMTA ATSATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC  180
HSVLDPRTLA AVVFSCPDCD EVFVKPDSLE LHRSTRHAVS ELGADDTSRN IVEIIFQSSW  240
LKKNAPVCRI ERILKVQSSD KTIKRFEQHK EAVKEKARSA GDEAGRNPRC VADGNELLRF  300
HCTTFACSLG LAGGTALCCA SSVDGNGRIT TMATSGRAHD TAEVSPDGEK RAMLVCRVVA  360
GRVKKLHSSN SSEDHDCDSV SPCSEGVYSD LDELFVFSPR AILPCFVVIY SGY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	98	SGGGGGGDGGGGGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110948	0.0	AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616600.1	0.0	uncharacterized protein LOC4349886
TrEMBL	A0A0E0BFT7	0.0	A0A0E0BFT7_9ORYZ; Uncharacterized protein
STRING	OGLUM11G04100.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-78	C2H2-like zinc finger protein