PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G11800.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 492aa    MW: 50494.1 Da    PI: 7.2422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G11800.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-063253651155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OGLUM11G11800.3 325 VRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 365
                      6******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.414314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-12324382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-5324370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.46E-7326369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGVHEAAL  60
MDELASRLGG VCGGGLGGGG VPSPPSSSRY ASCYSTPVGS PCKPVPAPPV PSLLAAADAM  120
IAERAARMSC LAAAGHGGGK LSRAASSQSL LAEPGAAGGV HQLPASDGSS SDAPSRKRKA  180
PGSKARGKDA ATSIAKVLPL LSASPLQSQR RTSPETMVNF PQSPEPGTKA KKCKLSADAA  240
GDEDTKPVAG DAGHGGNGKG KVLDAAGEPP KDYIHVRARR GQATDSHSLA ERVNAAGVYA  300
AIHNFVFSSI LAFADAIAAV FHLQVRREKI SERMKLLQDL VPGCNKVTGK AVMLDEIINY  360
VQSLQRQVEF LSMKLSTVNP QLDFDVDKFI PKDQANDPSM PAPLSLPPPP PPLSYSPEGA  420
SPGICYASSQ GTAMQSVVTS TKHLETAPTF ANHHVIPVPS LDGFHSAHSQ AGSCMWEDDL  480
QSVVQMGFRG NT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLA0A0E0BIN00.0A0A0E0BIN0_9ORYZ; Uncharacterized protein
STRINGOGLUM11G11800.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-47bHLH family protein