PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G11840.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 452aa    MW: 45880.8 Da    PI: 5.3967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G11840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C k F ++     H+r+H
  OGLUM11G11840.1 118 FACRICRKEFDTRKAVDGHMRVH 140
                      78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.068117143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-6117140No hitNo description
PROSITE profilePS5015710.325118145IPR007087Zinc finger, C2H2
SMARTSM003550.01118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-4222236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.75223247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39223252IPR007087Zinc finger, C2H2
PROSITE patternPS000280225247IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-6275302No hitNo description
PfamPF139120.0016280303IPR007087Zinc finger, C2H2
SMARTSM003556.3280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDDEH HRRAVLPPRD  60
NGDGCAEHKR CRLDNAATAP APSAGSVLTT SNGSAIVAIA SAAAAAAAAV STMAREVFAC  120
RICRKEFDTR KAVDGHMRVH RQQSIATPKY NAADNSRVTV VAEPRTDLDL SGPHGSSSAP  180
PSPPAPPANP PNHNQAVGHQ PAAAAPNAGV VVVEGAPQKS LPYMCKMQGC GRAFPTHQGL  240
GGHAAGHQNR SKAAAAAASE QGSSGTGADG CHGGADSSKH RCRECGMEWK TGFALGGHMR  300
KHQTKEKVTV NEKEPNVAGK HISLGPPPSP DLTPAAAEVT SSEPLDQPPL LPMVVGAEVA  360
APALLALANE AAALPPQDDQ AEEEAAAEAA APAEAAALPP VEAGAEAVDV GAAPEAPLPA  420
PIAGMGTVRI FGFLVEKPAP GDGSGGEGSA PA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.10.0myristoylated alanine-rich C-kinase substrate
TrEMBLA0A0E0BIN40.0A0A0E0BIN4_9ORYZ; Uncharacterized protein
STRINGOGLUM11G11840.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012