PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G13920.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 113aa MW: 13338.2 Da PI: 9.1237

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G13920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58.3	1.6e-18	1	102	239	361
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 +vv+eqea+hn++ ++erf+eal+yy+ s e + vEr llg+ei+n+ + he+le+W +rle aGF+ +pls++ OGLUM11G13920.1 1 MVVTEQEASHNAALLAERFVEALNYYAR-----------GSVEHTRVERWLLGEEIMNI------W----HERLERWVRRLEGAGFGRIPLSYY 73 79**********************74...........4567779********8......4....89999*************** PP GRAS 333 aakqaklllrkvksdgyrveeesgslvlg 361 a qa+++ + + dg++v ee+g ++l OGLUM11G13920.1 74 ALLQARRVAQGLGCDGFKVREEKGNFFLF 102 **********************99873 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.7E-16	1	102	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	10.069	1	95	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVVTEQEASH NAALLAERFV EALNYYARGS VEHTRVERWL LGEEIMNIWH ERLERWVRRL 60 EGAGFGRIPL SYYALLQARR VAQGLGCDGF KVREEKGNFF LFFVSTWRGR RFD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC124151	2e-94	AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence.
GenBank	AP014967	2e-94	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819415.1	1e-53	scarecrow-like protein 3
Refseq	XP_025819416.1	1e-53	scarecrow-like protein 3
Swissprot	Q9LPR8	2e-29	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A0E0BJB9	8e-76	A0A0E0BJB9_9ORYZ; Uncharacterized protein
STRING	OGLUM11G13920.1	1e-76	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-31	scarecrow-like 3

Publications ? help Back to Top
Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]