PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G14240.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 665aa MW: 73591.9 Da PI: 8.5505

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G14240.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.5	2.4e-31	33	161	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G+ F+Pt+ elvv+yL +++ +++l++ ++i++vdi ++Pwd+ ++++ +fF++++++++++ ++n a+ +g+W+ g++ ++++k OGLUM11G14240.1 33 SVGCVFRPTEGELVVNYLYRRAMQEPLPC-DFITDVDIQCHNPWDIV--PGEKKNGKHFFTRKENSHPRDYESNHAAGDGFWRLAGTEVPIYNK 123 68*************************.99**********5..34566799********************************* PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+k+tLvf+ +++++e+t Wvm+e+rl OGLUM11G14240.1 124 psggaDEKLVGMKRTLVFHFRKSSSTERTGWVMQEFRL 161 999988889******9999***********98 PP
2	NAM	97.8	1.6e-30	403	528	8	128
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 hPt+ elv +yL +++ + +l e+i +v+i++++Pwd+ +++++ek yfF++++ k ++++r+nr+t++g+W++ g++k+v+ + + OGLUM11G14240.1 403 HPTEGELVFHYLYRRAVNMPLLS-EFICDVNILRHNPWDIVpGALTEREKGKYFFMQKEIKCPSSRRSNRITSKGFWRSAGSEKPVYYNqgG-- 493 9*****************777.89**********54788889999********************************98551.. PP NAM 99 l.....vglkktLvfykgrapkgektdWvmheyrl 128 vg+++tL+fy g+++++e+t+W m+e+rl OGLUM11G14240.1 494 GsdcmlVGMRRTLTFYFGNSRTAERTKWGMQEFRL 528 234566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-33	29	171	IPR003441	NAC domain
PROSITE profile	PS51005	32.74	32	227	IPR003441	NAC domain
Pfam	PF02365	9.6E-17	34	161	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-33	215	226	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-34	396	538	IPR003441	NAC domain
PROSITE profile	PS51005	33.046	396	597	IPR003441	NAC domain
Pfam	PF02365	4.4E-15	403	528	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MRRICPRFKI NGRTMAGPGV CINLLNGTTM HLSVGCVFRP TEGELVVNYL YRRAMQEPLP 60 CDFITDVDIQ CHNPWDIVPG EKKNGKHFFT RKENSHPRDY ESNHAAGDGF WRLAGTEVPI 120 YNKPSGGADE KLVGMKRTLV FHFRKSSSTE RTGWVMQEFR LAGASLVPCL VMRPATGDVS 180 MPPCGCTETT TTKKNNGSPS AAHTHAPLVE TMVEPDNSWM ICRIYKKRQR APQVIIPPSI 240 GNAREAVLAV PAIGNAGDRQ VNFIDFPGHR CFEEGSDESA NVITKDKGSD ARQEKKNGKH 300 FFTCKEKKHH GNNCRNHAAG VGFWRLASTE ALEVFICREH GMSNARVPTS WFLPLALLCD 360 ATISPSFEEG SSESVNVTDN VKDGGGHCMN GATMHLPAVG MSHPTEGELV FHYLYRRAVN 420 MPLLSEFICD VNILRHNPWD IVPGALTERE KGKYFFMQKE IKCPSSRRSN RITSKGFWRS 480 AGSEKPVYYN QGGGSDCMLV GMRRTLTFYF GNSRTAERTK WGMQEFRLAG NGLSPYPAMK 540 HATGDGSKPP CNCAETTIAK RNDGLSAVLR NVLAVTPLVE TVVEPDGSWL ICRIYRTRQR 600 ALPVITPPAI ENAREIIIPP ANGNAREAQV RFIDFLRQGS HCSCIVGPSL AEGSDESAGS 660 VDQKD

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MRRICPRFKI NGRTMAGPGV CINLLNGTTM HLSVGCVFRP TEGELVVNYL YRRAMQEPLP  60
CDFITDVDIQ CHNPWDIVPG EKKNGKHFFT RKENSHPRDY ESNHAAGDGF WRLAGTEVPI  120
YNKPSGGADE KLVGMKRTLV FHFRKSSSTE RTGWVMQEFR LAGASLVPCL VMRPATGDVS  180
MPPCGCTETT TTKKNNGSPS AAHTHAPLVE TMVEPDNSWM ICRIYKKRQR APQVIIPPSI  240
GNAREAVLAV PAIGNAGDRQ VNFIDFPGHR CFEEGSDESA NVITKDKGSD ARQEKKNGKH  300
FFTCKEKKHH GNNCRNHAAG VGFWRLASTE ALEVFICREH GMSNARVPTS WFLPLALLCD  360
ATISPSFEEG SSESVNVTDN VKDGGGHCMN GATMHLPAVG MSHPTEGELV FHYLYRRAVN  420
MPLLSEFICD VNILRHNPWD IVPGALTERE KGKYFFMQKE IKCPSSRRSN RITSKGFWRS  480
AGSEKPVYYN QGGGSDCMLV GMRRTLTFYF GNSRTAERTK WGMQEFRLAG NGLSPYPAMK  540
HATGDGSKPP CNCAETTIAK RNDGLSAVLR NVLAVTPLVE TVVEPDGSWL ICRIYRTRQR  600
ALPVITPPAI ENAREIIIPP ANGNAREAQV RFIDFLRQGS HCSCIVGPSL AEGSDESAGS  660
VDQKD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-18	30	528	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ940196	0.0	FJ940196.1 Oryza sativa Japonica Group clone KCS246C06 NAM protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616648.1	1e-118	NAC transcription factor NAM-1
TrEMBL	A0A0E0BJF0	0.0	A0A0E0BJF0_9ORYZ; Uncharacterized protein
STRING	OGLUM11G14240.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4482	23	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	7e-26	NAC domain containing protein 83