PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G00350.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 158aa MW: 17490.9 Da PI: 6.6534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.5	5.6e-44	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lqqq++ql+ +l OGLUM12G00350.1 11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQQQVSQLQMQL 104 7********************************************************************************************* PP DUF260 95 allkee 100 al+++e OGLUM12G00350.1 105 ALANAE 110 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.718	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP 60 PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQQQVSQL QMQLALANAE TAALQLQLQQ 120 QHQDQDDHQQ QPCILENAAA HHQLMLQEAF LKKESMWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	2	110	2	110	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	2	110	2	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT828113	0.0	CT828113.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020B08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618081.1	2e-92	LOB domain-containing protein 12
Refseq	XP_015618082.1	2e-92	LOB domain-containing protein 12
Refseq	XP_015618083.1	2e-92	LOB domain-containing protein 12
Refseq	XP_025877106.1	2e-92	LOB domain-containing protein 12
Refseq	XP_025877964.1	2e-92	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-54	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0E0BMN8	1e-113	A0A0E0BMN8_9ORYZ; Uncharacterized protein
STRING	OGLUM12G00350.1	1e-113	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-44	LOB domain-containing protein 4

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]