PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G00790.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 184aa    MW: 20447.3 Da    PI: 11.5296
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G00790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.72.6e-27151432121
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.eaesssssasnsssgka 90 
                      ag kd+hsk+ T++g+RdRRvRls++ a+ f+d+qd+LG d++sk+ieWL++    ai++l ++     +++a +  + ++++ s++++s+++a
  OGLUM12G00790.1  15 AGEKDKHSKVVTSRGLRDRRVRLSVPMAIAFYDIQDRLGIDQPSKAIEWLIR----AIDALLSLdcslVFPNAAQLlTRWRRRPSSGQPSEEQA 104
                      789************************************************7....78888888666644444444666666666666666644 PP

              TCP  91 aksaakskksqksaasalnlakesr........akarar 121
                      ++ +a+   s++++ +++ + ++          ak rar
  OGLUM12G00790.1 105 CTRKATVAASPRKSGEKRRKTRSGCaarraeriAKLRAR 143
                      444444444444443333333333311111112444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.3E-2816144IPR005333Transcription factor, TCP
PROSITE profilePS5136923.5091775IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAAAWWTSRV ARVVAGEKDK HSKVVTSRGL RDRRVRLSVP MAIAFYDIQD RLGIDQPSKA  60
IEWLIRAIDA LLSLDCSLVF PNAAQLLTRW RRRPSSGQPS EEQACTRKAT VAASPRKSGE  120
KRRKTRSGCA ARRAERIAKL RARREGWMPR REASTSAASG GGSTGEIEED ELKHGGERSN  180
QVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-182266145Putative transcription factor PCF6
5zkt_B5e-182266145Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005100.0BX000510.1 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619107.12e-78transcription factor PCF8-like
TrEMBLA0A0E0BMU61e-128A0A0E0BMU6_9ORYZ; Uncharacterized protein
STRINGOGLUM12G00790.11e-129(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-25TCP family protein