PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01350.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 153aa    MW: 17295.2 Da    PI: 10.2962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.36.4e-08105126223
                      --SS-EEEEEEE--TT-SS-EE CS
             WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                      dDg++WrKYG K+  +s+fp s
  OGLUM12G01350.1 105 DDGHQWRKYGEKKLSNSNFPSS 126
                      8******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-792125IPR003657WRKY domain
SuperFamilySSF1182902.88E-796126IPR003657WRKY domain
SMARTSM007740.002104152IPR003657WRKY domain
PfamPF031061.4E-5105126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MRGRRVLTLK NGRLPSLFNG AINKSGQRRA PIPTPSSSSP SSLPSETTRP PQNLPFFSET  60
EMALDSVPSY PSDLGSSRAR TPQQQRVSPR KEERTWTTDT YAPYDDGHQW RKYGEKKLSN  120
SNFPSSGRTA PTHQYLPEWK CIVVYYNPNH VDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0732431e-148AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BN191e-108A0A0E0BN19_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01350.11e-109(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-07WRKY DNA-binding protein 55