PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G01380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 168aa    MW: 18631.7 Da    PI: 7.947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G01380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.44.2e-1110522159
                     -EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY 21 prsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                     ++ YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  OGLUM12G01380.1 10 TKFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 52
                     577******99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.07E-10953IPR003657WRKY domain
PfamPF031064.2E-131051IPR003657WRKY domain
SMARTSM007743.9E-81053IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-101152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQDSAGFGVT KFYYRCTYKN DMKCPATKQV QQKDTNDPPL FSVTYFNHHT CNSSPKIVGS  60
TPDSTVQSRK AISICFNSHG KTGELPTFLS PSASLLSPSM QPYSSNQQPD MNTYSRQFHW  120
ADTSSSTSYA PVKMEADDYA EASASPSTTG ALSRTLLPID YRYFFVVP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005000.0BX000500.4 Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620027.11e-105probable WRKY transcription factor 29 isoform X2
TrEMBLA0A0E0BN221e-121A0A0E0BN22_9ORYZ; Uncharacterized protein
STRINGOGLUM12G01380.11e-122(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-10WRKY DNA-binding protein 46