PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04960.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 412aa    MW: 43361.7 Da    PI: 10.7694
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.5e-15149181133
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                      C nC + +Tp+WR+gp g +tLCnaCG++ r  
  OGLUM12G04960.1 149 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 181
                      99**************************99865 PP
2GATA56.83e-18277311135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  OGLUM12G04960.1 277 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 311
                      *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.8E-157587No hitNo description
PRINTSPR012176.8E-1594110No hitNo description
PRINTSPR012176.8E-15126138No hitNo description
SuperFamilySSF577161.62E-12142184No hitNo description
PROSITE profilePS5011412.097143182IPR000679Zinc finger, GATA-type
SMARTSM004015.0E-12143194IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-13147181IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-9148182No hitNo description
PfamPF003203.8E-12149180IPR000679Zinc finger, GATA-type
PROSITE patternPS003440149174IPR000679Zinc finger, GATA-type
PRINTSPR012176.8E-15199215No hitNo description
PRINTSPR012176.8E-15218235No hitNo description
PRINTSPR012176.8E-15239264No hitNo description
SMARTSM004013.1E-16271321IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.716271307IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14273333No hitNo description
Gene3DG3DSA:3.30.50.109.1E-15275309IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.96E-15276333No hitNo description
PfamPF003204.6E-16277311IPR000679Zinc finger, GATA-type
PROSITE patternPS003440277302IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAAVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGVRYV LALPAMASLA  60
VLIAHLDAAV PVPRRPRSYL PRAVPMAWWA FRLPVFRPPP PPPPPPAKNP VKEEEGVARV  120
VVVVAPPPPP VDPGEEEAGK RAAKRARRCL NCDAVETPQW RSGPMGRSTL CNACGVRLRA  180
VGSLPEHRAP AARTTTAAPA SPPDSPIWTP GHKPPSSSPD IYLVRRTPKL PVTRPPRTKQ  240
APPTAPAPAP PPPPPQPASP KTKTKAKAKK PKRKRSCVHC GSTETPQWRE GPTGRGTLCN  300
ACGVRYRQGR LLPEYRPKGS PTFSPSVHAA NHRQVLELRR QQRQSTNPST PPPPPVSAAE  360
PIPDEQKEEV VSVPVAAAAP ATDGGAASSL DALLLDGPSA PLIVDGDDFL VS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683060.0AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.10.0vegetative cell wall protein gp1
TrEMBLA0A0E0BPJ60.0A0A0E0BPJ6_9ORYZ; Uncharacterized protein
STRINGOGLUM12G04960.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.24e-23GATA transcription factor 11