PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G05210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 417aa    MW: 42372.1 Da    PI: 6.1836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G05210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.72e-421052503125
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgk 89 
                       +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++       + ++s ssasn++ ++
  OGLUM12G05210.1 105 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRAS 198
                      689*****************************************************************88766666665566666666666666 PP

              TCP  90 aaksaa.kskksqksaasalnlakesr...............akarararer 125
                        ++ a +++++q++ +++l ++++                 a a +r+r+r
  OGLUM12G05210.1 199 PFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 250
                      6666666888888888888888875445666666666666555555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-38110221IPR005333Transcription factor, TCP
PROSITE profilePS5136928.705110164IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDHGGGGGGG GAAPSSSNSG GGSGGGGGGG GGRENHPHHP FYYSGPAAAA AAAAAAQQQQ  60
QTFMGALAIT PVVAEQPQGS SGGGEKKVVA PTTPAAAGAA ATTTLAKRPS KDRHTKVDGR  120
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSSLNIS  180
IRSGAASASS ASNPNRASPF PALALHPHHQ QHDVSAMLGY HHHLLPPPQQ QQESPQDPGG  240
AGAFMRKRYR EDLFKEDDDR QDPSAPKARE QQPTTPQAAA AAAAAAMWAV APNTAAPGGA  300
FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL  360
GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139330.0AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.10.0transcription factor PCF3-like
SwissprotQ53PH24e-75PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0BPN90.0A0A0E0BPN9_9ORYZ; Uncharacterized protein
STRINGOGLUM12G05210.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-44TCP family protein