PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G06360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 129aa    MW: 13813.1 Da    PI: 9.7917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G06360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.26.5e-1173981843
                     HHHHHHHHHHHHHHT-EEEEEEE-TT CS
           SRF-TF 18 ngilKKAeELSvLCdaevaviifsst 43
                     ng+lKKA+ELSvL daev  iifs++
  OGLUM12G06360.1 73 NGLLKKAYELSVLYDAEVTPIIFSNR 98
                     8***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004041.7E-67085IPR002100Transcription factor, MADS-box
PfamPF003191.9E-87397IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-973115IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.31173108IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-685106IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MTSPCSKSPW LPQLLPPATL PRQAQHAPWQ VRKPLVAPGK HRRPTPAACL ETVVLFDGPW  60
CAGTFAAAGN GVNGLLKKAY ELSVLYDAEV TPIIFSNRAM ASAMTNSESS NIITMVLREA  120
ATMVPKVSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2881193e-50AK288119.1 Oryza sativa Japonica Group cDNA, clone: J080051I03, full insert sequence.
GenBankAP0032353e-50AP003235.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0039A07.
GenBankAP0032793e-50AP003279.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0529E05.
GenBankAP0032863e-50AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149573e-50AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126143e-50CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BQ251e-89A0A0E0BQ25_9ORYZ; Uncharacterized protein
STRINGOGLUM12G06360.12e-90(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.28e-09MIKC_MADS family protein