PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G07210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 214aa    MW: 21968.2 Da    PI: 4.7366
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G07210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-06545640
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     C+ +e+ e+   C  ++  lC+ C  + H+       H +v
  OGLUM12G07210.1  5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHPRV 45
                     *****************************656777777766 PP
2zf-B_box24.75e-086499437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                     ++C+ ++ek   +fC +++ llC++C +  H    H
  OGLUM12G07210.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVDVHTAtaH 99
                     79**************************99955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.641147IPR000315B-box-type zinc finger
SMARTSM003369.8E-8547IPR000315B-box-type zinc finger
CDDcd000211.25E-5547No hitNo description
SMARTSM003361.0E-1061108IPR000315B-box-type zinc finger
PROSITE profilePS501198.88761108IPR000315B-box-type zinc finger
PfamPF006432.9E-66499IPR000315B-box-type zinc finger
CDDcd000212.34E-56693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHPRVALLLP SSSSAAAGDD  60
DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VDVHTATAHA AAHRRFLITG VRIGGSVDAA  120
AAADVIVSPT SSSIAPAGSA SSNHAVAGAG AAGNNNGRSP APVRFSGGDG GVEPEQQWPW  180
SDVFAADDDD DVSAAMEQCY YHGISEPHSS SLTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0678200.0AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618519.11e-118B-box zinc finger protein 23
TrEMBLA0A0E0BQD41e-152A0A0E0BQD4_9ORYZ; Uncharacterized protein
STRINGOGLUM12G07210.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-34light-regulated zinc finger protein 1