PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G07580.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 229aa MW: 25230.9 Da PI: 4.5906

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G07580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	4.8e-25	105	195	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l OGLUM12G07580.1 105 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 195 9*****************944567789*******9999888787888999***********999.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-22	105	195	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDHAAA AAAAAAEQDV 60 MRDFAPADGD GDGDGDGDGD ADAENDPKEP VLGMTFESDE AAKMFYNEYA RWLGFPFRVG 120 RSRRSKGMEE VVIMKRFVCS REGAHKKKQP STSGEATSKR ERASMREGCN AMMEVVRDKD 180 HWVVSKLEKA HNHSLGIGTR YGYLRARGLP DVFGIRSARC FFKFSPNAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620344.1	1e-127	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0BQI4	1e-167	A0A0E0BQI4_9ORYZ; Uncharacterized protein
STRING	OGLUM12G07580.1	1e-168	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-20	FAR1 family protein