PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G09840.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1373aa    MW: 152796 Da    PI: 7.5874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G09840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003512541277122
                       EEET..TTTEEESSHHHHHHHHHH CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                       ++C    C++sFs++ +L  H r 
  OGLUM12G09840.1 1254 FPCDieGCDMSFSTQQDLLLHKRD 1277
                       789999***************985 PP
2zf-C2H211.90.0007113371363123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg++F+  s++ rH r+  H
  OGLUM12G09840.1 1337 YECQepGCGQTFRFVSDFSRHKRKtgH 1363
                       899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.4E-142154IPR003349JmjN domain
PROSITE profilePS5118432.998190359IPR003347JmjC domain
SMARTSM005585.2E-43190359IPR003347JmjC domain
SuperFamilySSF511979.61E-23207356No hitNo description
PfamPF023731.6E-34223342IPR003347JmjC domain
SMARTSM003559.712541276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712771306IPR007087Zinc finger, C2H2
SMARTSM003551512771301IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012791301IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-1412881344No hitNo description
Gene3DG3DSA:3.30.160.605.3E-1113041331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.6E-413071331IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65513071336IPR007087Zinc finger, C2H2
PROSITE patternPS00028013091331IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-1013321360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1813371363IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92613371368IPR007087Zinc finger, C2H2
PROSITE patternPS00028013391363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1373 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQD AFAAAASSNG AGGDPSPTFP PTFPTRLQQV GLSARNRRAA SRRVWESGER  120
YTLEAFRAKA AEFEPPRHAA PPRNPTHLQL EALFWAACAS RPFSVEYGND MPGSAFASPD  180
ELPDAANATD VGETEWNMRV APRARGSLLR AMARDVAGVT TPMLYVAMLY SWFAWHVEDH  240
ELHSLNFLHF GKAKTWYGVP RDAMLAFEET VRVHGYADDL NAIMAFQTLN EKTTVLSPEV  300
LLSAGVPCCR LVQKAGEFVI TFPGAYHSGF SHGFNCGEAS NIATPHWLQV AKEAAIRRAS  360
TNCGPMVSHY QLLYELALSL RPREPKNFYS VPRSSRLRDK NKNEGDIMVK ENFVGSVAEN  420
NNLLSVLLDK NYCIIVPNTD FFVPSFPVAL ESEATVKQRF TAGPCSISQQ GAENMAVDHV  480
AVDKVTDIQD MSGSLYPCET SLVGCSNRKL YETKYGQRDA AALCLSTSEI QSRGIDKARS  540
HPAGGILDQG RLPCVQCGIL SFACVAIIQP REAAVQFIMS KECISSSAKQ GGIGASDDTS  600
NWIDQSHEIS PPPGPASGTD DNVKHTVSLA HVSDRCRELY ASNTDGCTSA LGLLASAYDS  660
SDSDDETTED VLKHSKKNDS VNQSMDTQIL ETSASYSSTV RCQKTNSHSH EEECEARATS  720
LMKPVSHNSR PISQSNRDTD IDQFIELGKS GTQCSGYLDL VDDLTTSVLK SSSDTCVSAA  780
KASMDPDVLT MLRYNKDSCR MHVFCLEHAL ETWTQLQQIG GANIMLLCHP EYPRAESAAK  840
VIAEELGIKH DWKDITFKEA TEEDVKKIRL ALQDEDAEPT GSDWAVKMGI NIYYSAKQSK  900
SPLYSKQIPY NSIIYKAFGQ ENPDSLTDYG CQKSGSTKKK VAGWWCGKVW MSNQVHPLLA  960
REREEQNSSV VYGKAMFTTI SHGKVQDEAS TRCNTSNRTP SKRTSRRKKG VSAEKSKPKN  1020
KRSTASDEAS MHCSGLGMNS GVIHDQTENS DDYDKHGNGD EIEEGTNPQK YQQRKLQNVT  1080
RKSSSKKRKD EKRTDSFHEL YDEDNGVDYW LNMGSGHDAT LGNSQQQSPD PVKVKSGGKL  1140
QGKRKSSKYK SNDDLLNEEN KLQKMNKKSS SKKQKNDKIN RQLQEDQTED DHMDHLVDVA  1200
VADEVTLDNE DKITEDKIDD VKVKSRGKSQ NGKRKGSKHQ ASDGLRAGNK VAKFPCDIEG  1260
CDMSFSTQQD LLLHKRDICP VKGCKKKFFC HKYLLQHRKV HIDERPLKCT WKGCKKAFKW  1320
PWARTEHMRV HTGVRPYECQ EPGCGQTFRF VSDFSRHKRK TGHSSDKRRK NST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-69123807353Transcription factor jumonji (Jmj) family protein
6ip4_A2e-69123807353Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0lysine-specific demethylase REF6
TrEMBLA0A0E0BRB60.0A0A0E0BRB6_9ORYZ; Uncharacterized protein
STRINGOGLUM12G09840.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-153relative of early flowering 6