PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G12500.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 210aa    MW: 22552.8 Da    PI: 6.3038
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G12500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.82e-1779126156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv  +++L G++         lmkv+gLt ++vkSHL kYRl+
  OGLUM12G12500.1  79 KARRCWSPELHRRFVATLQRLDGPQ--------GLMKVDGLTDDEVKSHLHKYRLH 126
                      68*******************9998........79*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-977129IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-1677129IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1479126IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSISNHHVSN AFMPLATSLV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV  60
TDVARVQRRR QQQQAVQRKA RRCWSPELHR RFVATLQRLD GPQGLMKVDG LTDDEVKSHL  120
HKYRLHTRRA SDGGGDSGGL WTPPPEQYTT SQHNTSQSPA LTVSSSHAAS VTAGDSCDGG  180
EEEEEEEEDD GKSESYSWEM QNGARASLSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361361e-158AC136136.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence.
GenBankAP0149591e-158AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879396.11e-86LOW QUALITY PROTEIN: transcription factor HHO2-like
TrEMBLA0A0E0BSD01e-153A0A0E0BSD0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G12500.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-18G2-like family protein