PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G12510.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 881aa    MW: 95765.6 Da    PI: 7.9486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G12510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08176218347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT +E++ + +a +q G++ +++I  +++  ++  q++++++ +
  OGLUM12G12510.2 176 AWTRQEEQNFFNALRQVGKN-FEKITLRVQ-SKSKDQVRHYYYRL 218
                      6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-9171222IPR009057Homeodomain-like
PROSITE profilePS5129313.155172223IPR017884SANT domain
SMARTSM007175.2E-7173221IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-5176225IPR009057Homeodomain-like
PfamPF002494.5E-7176218IPR001005SANT/Myb domain
CDDcd001671.37E-6176219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MWQFAQFGLM RMRSSSPCGP SRRWSVATNR RWSSGDQHRL AFRCTACCCC RRRCTLATSV  60
TALLVTLAGA AGHAGEERDR SGTAAGNGVA VAAFSGPKCK NPAKIIVRPC CSASTPVSSP  120
RELAHPPPCA DLHRFRDFAS SGAVVRPAAS AASWFGGSTE PPMSLVRSAP ARQWAAWTRQ  180
EEQNFFNALR QVGKNFEKIT LRVQSKSKDQ VRHYYYRLVR RMKKLLGPEF SLDAKNSKDT  240
IAAMLCWWSL LEKFSCSASK LHLKPRRFKT FVEALGNQLL KDRNKTRKKC PRGDVCLSSS  300
SSAVNRTPGN ESFSVKLLAV DVSNGSKVGS SKGSFFKKVT EPNCSNKSGA TKGDLSATRT  360
VKQKRRAGGV VASAAYKKWE RAAMAGVSLV ADAAEELERN TVNADARMLS PSSSNACTVD  420
GLGTNHIKEA DQQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSARK KISSVLEHLN  480
RKWGNSNIAS GELLLFPYCA HQEDLATYQR WTTKDTVAVA DVFLSVNSPS VFRLRYGWFS  540
LAELEAGVSE ISLTHFENCL IPEDIHAKSP SEACVQKDGN SLSSCAPEQH PCGSKDQSAL  600
LLAMPSSTGK SAQVPEQCID VLPSQFGRQN QDQVTTNQVF EVDQGMDCAA VSEGEWADTL  660
TDISVGYLLT EASRGANTDC PGTSVVKNTL LLENPCSYDS FDAAVALHAS RYKSAEQPAL  720
ASHSTIWGAE ETCDAFSFNL PASRKREGSN NSASSSPDSD SDVHPSNSEG FQGFLQDLAG  780
AAVAHNPCID DAKDIESLCA ESPPRSDHDS APKDQSLADL YWPDSLGPLD LDIPSATYHA  840
DDLLLGDSQN SWNRMMANSL DAFRNLSFFT ADKNDSIPSI M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1030290.0AK103029.1 Oryza sativa Japonica Group cDNA clone:J033117C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632626.10.0TSL-kinase interacting protein 1
RefseqXP_015632627.10.0TSL-kinase interacting protein 1
TrEMBLA0A0E0BSD20.0A0A0E0BSD2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G12510.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.21e-162TSL-kinase interacting protein 1