PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G17840.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 354aa MW: 35826.7 Da PI: 8.8942

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G17840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	98	155	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s OGLUM12G17840.1 98 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 155 679***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	81	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	99	153	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	99	153	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	101	137	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GGGGGGSDHH HLMPPPSGLA PLPSAAGAAD 60 TAASAPAAAA QQQQPRPAVV SMSERARLAR VPLPEPGTLR CPRCDSTNTK FCYFNNYSLS 120 QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSTKKSS SSSSSRQGGG AGNAAAATSS 180 SSSTSTSTTA TTSSAAAAAA AADVIASMQA GGALLPHHLI GGLPSSAAAA AALEASLEGY 240 HHHHHHHGHG HQLPFLQPPP FLQQGLHGYH FADGDVIAGG GALADGGFPR GVASGLLAQL 300 ASVKMEEHGT NNGGGVGGGF VGAHEQYWHG GNGGGGWPAE FLSGFSSSSS GNVL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVFSSLPIFL DPPNWTQMQQ QPLQCLIGGG GGGGGGSDHH HLMPPPSGLA PLPSAAGAAD  60
TAASAPAAAA QQQQPRPAVV SMSERARLAR VPLPEPGTLR CPRCDSTNTK FCYFNNYSLS  120
QPRHFCKACR RYWTRGGALR NVPVGGGCRR NTKRSTKKSS SSSSSRQGGG AGNAAAATSS  180
SSSTSTSTTA TTSSAAAAAA AADVIASMQA GGALLPHHLI GGLPSSAAAA AALEASLEGY  240
HHHHHHHGHG HQLPFLQPPP FLQQGLHGYH FADGDVIAGG GALADGGFPR GVASGLLAQL  300
ASVKMEEHGT NNGGGVGGGF VGAHEQYWHG GNGGGGWPAE FLSGFSSSSS GNVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619417.1	1e-131	dof zinc finger protein DOF5.1 isoform X1
TrEMBL	A0A0E0BU95	0.0	A0A0E0BU95_9ORYZ; Uncharacterized protein
STRING	OGLUM12G17840.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-36	Dof family protein