PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G18470.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 905aa MW: 99252.6 Da PI: 5.6183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G18470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	552	573	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F+r+ nL +H t+ OGLUM12G18470.1 552 PCQFCGKNFKRRGNLLNHELTC 573 6*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.954	551	585	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence Send to blast
MASDVPQDDV QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRATHSEM 60 ASDGPQENCQ CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR 120 RKRTARNQPL PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD 180 PSVMQKQKKK LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP 240 DHKDPSRMQM QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK 300 EKRTDNGSVP TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD 360 DLKTLAPTDT NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLPSKN 420 PLLLLFLSHH RIQKPPASTA RRRRRAMNLV RGRVQIRRMP RPIRARAPSP ALARSVHSTR 480 GVHRERLTSK KAEEERAGRV GINKKLDSSL LVKESLPTTT WTCTDLRWVQ DFRFLLVLGF 540 AVHEMASEWD SPCQFCGKNF KRRGNLLNHE LTCKYISDVH PQTESSGDAQ ARKDILGFHI 600 PRQKRTVPTF PASDYAQGGI NGATTSEAKV DRDPEEETDV LEALLLLREQ PAYPGEETFS 660 DGEPGAGNVD DEPAASNPDK VLTMCSDKGS SSPVECYGGD ERRVGARAIA GVEEDDLNPN 720 VGCRGVTDCV DESDVIQKQK RKPDLSVADL RDLVEMKQQN MKADTNIHDQ GHPSVMQMQK 780 NELGLDLLPH KNSSDHEVPT LSVSSMDDPD GLVSTDTNSD KETETVNVGT DINIPEQRES 840 SVTRMQNEKL GLNLLPRNDS SGHEVPILSV SSTDDLNSLI PTDTKSDKDT NSNVADSLGH 900 CPAQE

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence Send to blast

MASDVPQDDV QCHFCGTYLR PRSFRKHQQR CKYNPDALTR ENLPASSIPA SATRATHSEM  60
ASDGPQENCQ CSFCHKDFEG RSSCAKHELQ CKNNPDVHSQ TEPSGNAQGG IGSLDVHVPR  120
RKRTARNQPL PEQHLKKPAS DYAQGGTSDA PETPPKPTTS EVKVDSAVNA PDITIPDNKD  180
PSVMQKQKKK LDLNLQPHSD SSDQEEQADN FSSINDLSTI GTNSDKKKNT ITGVADTNIP  240
DHKDPSRMQM QIKLDLNLPP HDDSFSSMDD LNALVPADTN SDKEKKTDNG GAPADANSDK  300
EKRTDNGSVP TGTNSIKEKK TDNGGVDINI PDHKDPSARQ VQKKLSLNLP PCNDSSSSMD  360
DLKTLAPTDT NSDKETNTSN GGVDTNIPDH SDPSAMQTKN KLDFNLPPRN DSSDSLPSKN  420
PLLLLFLSHH RIQKPPASTA RRRRRAMNLV RGRVQIRRMP RPIRARAPSP ALARSVHSTR  480
GVHRERLTSK KAEEERAGRV GINKKLDSSL LVKESLPTTT WTCTDLRWVQ DFRFLLVLGF  540
AVHEMASEWD SPCQFCGKNF KRRGNLLNHE LTCKYISDVH PQTESSGDAQ ARKDILGFHI  600
PRQKRTVPTF PASDYAQGGI NGATTSEAKV DRDPEEETDV LEALLLLREQ PAYPGEETFS  660
DGEPGAGNVD DEPAASNPDK VLTMCSDKGS SSPVECYGGD ERRVGARAIA GVEEDDLNPN  720
VGCRGVTDCV DESDVIQKQK RKPDLSVADL RDLVEMKQQN MKADTNIHDQ GHPSVMQMQK  780
NELGLDLLPH KNSSDHEVPT LSVSSMDDPD GLVSTDTNSD KETETVNVGT DINIPEQRES  840
SVTRMQNEKL GLNLLPRNDS SGHEVPILSV SSTDDLNSLI PTDTKSDKDT NSNVADSLGH  900
CPAQE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619004.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619005.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619006.1	0.0	uncharacterized protein LOC4352628
Refseq	XP_015619007.1	0.0	uncharacterized protein LOC4352628
TrEMBL	A0A0E0BUH6	0.0	A0A0E0BUH6_9ORYZ; Uncharacterized protein
STRING	OGLUM12G18470.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15758	11	11