PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G18720.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 399aa    MW: 42140.9 Da    PI: 4.6106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G18720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1966115255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  OGLUM12G18720.1  66 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 115
                      789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-3065122No hitNo description
PROSITE profilePS5103219.55966123IPR001471AP2/ERF domain
SMARTSM003804.6E-3566129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2766122IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1966123IPR016177DNA-binding domain
PfamPF008479.8E-1466115IPR001471AP2/ERF domain
PRINTSPR003675.7E-86778IPR001471AP2/ERF domain
PRINTSPR003675.7E-889105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAFHLQPHSL TQAKLAIDRS SSMPPSMATA RVASPSTDRK RKASSEDDID AAALTSPPAP  60
ARGRKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT  120
NFWPRPSPPP AAVAPPETTT TPALPSKVTN LLLLRLKARN QQLVDAGAAA PQEAALLQLQ  180
QQTPASCQEV FVRSHGEEYG FHVDDFLSDA CSNEQYSGDS SLGLDDDDGE VEDEEEEELD  240
FQFMDVAPGA SSAAAEAGLG GEGALCSPFE MVAAELGGAV DVAAHDAMRQ MDYERKISAS  300
LYALTGVSEC LRIRAAAGAT AAARDHLTGL REACRKKQKF AAAAAAPPQQ QEPSPPPQQP  360
ETPASSGGGM SETASGGGGG DGDVLMWSSL DLAPICHMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.20.0ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0BUK40.0A0A0E0BUK4_9ORYZ; Uncharacterized protein
STRINGOGLUM12G18720.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11