PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G18780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 245aa    MW: 24940.1 Da    PI: 7.8031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G18780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006987109123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F +   L  H  +H
  OGLUM12G18780.1  87 HRCSVCGKAFASYQALGGHKASH 109
                      79**********99998888877 PP
2zf-C2H2110.0014153172120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ Cgk F++   L  H 
  OGLUM12G18780.1 153 HECNVCGKAFPTGQALGGHK 172
                      78*********988886665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.6E-1387111IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.36587114IPR007087Zinc finger, C2H2
SMARTSM003550.02387109IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.41E-1087109No hitNo description
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576674.41E-10148175No hitNo description
PfamPF139122.4E-13152177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-5153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.063153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388153175IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAVEAVLEAS RSSSEEEAEV IVTHGGGGGG GGQVEVWGKR KRSRRRRPQL PPSEEEYLAL  60
CLLMLARGRR DGDDVAASAS AAAAVEHRCS VCGKAFASYQ ALGGHKASHR KPPPPPPAMV  120
DDDEVVVETK PAAIATPSSS ASGVSGGGGG RAHECNVCGK AFPTGQALGG HKRCHYDGTI  180
GSAAGAGASK PAAKTTVAVA ASRGFDLNLP ALPDVAAAAD QRCAAEDDEV LSPLAFKKPR  240
LMIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2198470.0AY219847.1 Oryza sativa Japonica Group zinc finger protein ZFP252 mRNA, complete cds.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620192.11e-109zinc finger protein 1
SwissprotQ424305e-47ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0BUL21e-174A0A0E0BUL2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G18780.11e-174(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-26C2H2 family protein