PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19010.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 426aa    MW: 46608.7 Da    PI: 6.3975
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.42.6e-07292333546
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                      +r +r   NR +A++s ++K + + eL++k ++L++e ++L 
  OGLUM12G19010.1 292 RRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTLG 333
                      5789999******************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-12288352IPR004827Basic-leucine zipper domain
PfamPF077163.1E-5289338IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.979290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.04E-9292348No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-7292349No hitNo description
CDDcd147034.27E-19293344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGEPSRRLS LLDRCDDGSE DPVVPPRVPT ILNLASHHRL DRSKFLPLIH PDPARFISST  60
GSSFPPYSEP PPSAPMLEVG SGFGPEDLYS FFPNHFFSME SISLPPYDVV DVPPVIPLAL  120
RSGRSNQGLP SKLPLIEVHR RSHSDIPFGY SQEHPQMPPV ASVKPEVTTI EGHQLEDVVA  180
AALKDMGIQA WSPSGSIDKE VKSSGAGSTT HHCHSLSVDS FMMGNLNFGV VGQQMSSPPL  240
LTTEVNVGGG EPIGSTASPF AAELANVKFT EDEKKKIVMD KSLSEIVLTD PRRVKRILNN  300
RASATKSKEK KMKHVGELQR KLQVLQSETT TLGAQVTVMQ RNNNELVSQN NELKTRLQAM  360
DQLAQLGDAL TSRLAAEAQH LRAVVSEISD PNLPSGPHQQ LSSDMDQLQQ LLTQRQTSQI  420
QQNQPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550530.0CR855053.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635275.10.0uncharacterized protein LOC107275813
TrEMBLA0A0E0BUN80.0A0A0E0BUN8_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19010.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147931112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.12e-42bZIP family protein