PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19480.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 235aa    MW: 25634.1 Da    PI: 8.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-06156182430
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                      +h   E+rR +riN++f  L++l+P +
  OGLUM12G19480.1 156 THGLTEKRRGSRINEKFKMLQRLVPGC 182
                      78999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.03E-4138186No hitNo description
SuperFamilySSF474599.29E-7150184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.07152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7155185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATTAAAP AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG  60
EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG SGGDDVAAGG DHQDPAVKKP  120
DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRGSRINE KFKMLQRLVP  180
GCDKAMYPTM VRPAAVYPVV QPRPAASQGG LHRHRRLMVV VSVHHRCRCF RLGRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.11e-141transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBLA0A0E0BUU71e-173A0A0E0BUU7_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19480.11e-174(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-07bHLH family protein