PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19500.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 364aa    MW: 39798.1 Da    PI: 9.5195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13122201355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC..............................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkas...........................kapskKlsKaeiLekAveYIksLq 55 
                      ++h+  Er+RR +iN+ + +L++l+P +                            + + + ++ a++L k+++Y+ksLq
  OGLUM12G19500.1 122 QTHSLTERKRRCKINENLKTLQQLVPGCDkgtrsesskerrkitrarrssrysqthSLTERSNNQASTLDKTIRYMKSLQ 201
                      79*************************555*************************9888889*****************9 PP
2HLH11.90.000412052243655
                      S-STCHHHHHHHHHHHHHHH CS
              HLH  36 kKlsKaeiLekAveYIksLq 55 
                      + ++ a++L k+++Y+ksLq
  OGLUM12G19500.1 205 QSNNQASTLDKTIRYMKSLQ 224
                      5689***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.31E-12117149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.24119200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10122201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-9122202No hitNo description
Gene3DG3DSA:4.10.280.108.8E-15123209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9125206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.31E-12202231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR REEDNTSGCL PLSPPPPPEL  60
AVDDQLPAGG DGGGSGGEPV AVAVAEDDDS GERWTEDQGR RSESSKERRK ITRARRSSRY  120
SQTHSLTERK RRCKINENLK TLQQLVPGCD KGTRSESSKE RRKITRARRS SRYSQTHSLT  180
ERSNNQASTL DKTIRYMKSL QQHAQSNNQA STLDKTIRYM KSLQQHVQAM SVGCIMKPAA  240
AGVSYHPFLQ PPPYVRPAIA AGGAAPAGMV PRPLPSSMVP FAPVLPMVVH HPAPLMMMPA  300
APAPLMTYPG AGVAGPKAVT CWSSWRRSPQ DPGMPLLDLP PPPLPLSTTT TMTCSLTSSF  360
CWCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-138CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BUU90.0A0A0E0BUU9_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19500.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.16e-09bHLH family protein