PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19500.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 310aa    MW: 33463.1 Da    PI: 7.9891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19500.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.6e-15122170355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h+  Er+RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  OGLUM12G19500.2 122 QTHSLTERKRRCKINENLKTLQQLVPGC----DKSNNQASTLDKTIRYMKSLQ 170
                      79*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17117180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-14122174No hitNo description
PfamPF000103.8E-13122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17123177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR REEDNTSGCL PLSPPPPPEL  60
AVDDQLPAGG DGGGSGGEPV AVAVAEDDDS GERWTEDQGR RSESSKERRK ITRARRSSRY  120
SQTHSLTERK RRCKINENLK TLQQLVPGCD KSNNQASTLD KTIRYMKSLQ QHVQAMSVGC  180
IMKPAAAGVS YHPFLQPPPY VRPAIAAGGA APAGMVPRPL PSSMVPFAPV LPMVVHHPAP  240
LMMMPAAPAP LMTYPGAGVA GPKAVTCWSS WRRSPQDPGM PLLDLPPPPL PLSTTTTMTC  300
SLTSSFCWCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-138CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BUV00.0A0A0E0BUV0_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19500.11e-151(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-16phytochrome interacting factor 3-like 5