PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19710.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 250aa    MW: 27048 Da    PI: 6.5058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42.1e-1477128256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++G++ ++  grW AeIrd s +g   r+++g++ tae Aa+a++a +++++g+
  OGLUM12G19710.1  77 RFHGIHMRS-YGRWSAEIRDSSYRG--HRVWIGTYATAEAAARAYDAEARRIHGA 128
                      589999998.8*********65555..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-2477141IPR001471AP2/ERF domain
PROSITE profilePS5103219.32277135IPR001471AP2/ERF domain
PRINTSPR003678.2E-67889IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1878135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2478135IPR001471AP2/ERF domain
PfamPF008474.1E-778127IPR001471AP2/ERF domain
PRINTSPR003678.2E-6101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MCGGCLIPDE PVGKPARRTR AAAAGGDSGD GGKHGRRLCP GAAPCNCKPR RRAGAADDDD  60
VGRRRRTTRT RAASEVRFHG IHMRSYGRWS AEIRDSSYRG HRVWIGTYAT AEAAARAYDA  120
EARRIHGAKA NTNFPPPPND DDINGAPPPW DLEAYMRFLG EVELDDGGAE PPPPLNGNPE  180
LHMELASATQ SVHGDDEPWG LDKYMRFLSE VELDDGGAPP PPTPSQHGGV AAGSPQYGCR  240
YDYLLLMMCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-12771391476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14965RRRAGAADDDDVGRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5104820.0AB510482.1 Oryza rufipogon Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0120.
GenBankAB5104840.0AB510484.1 Oryza nivara Snorkel 1 gene for Ethylene response factor, complete cds, cultivar: W0106.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0BUX50.0A0A0E0BUX5_9ORYZ; Uncharacterized protein
STRINGOGLUM12G19710.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3124944