PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20290.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 294aa    MW: 31776.4 Da    PI: 10.5784
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.3e-32185241158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e+ekkl  k+rkpylheSRh+hAl+R+Rg gGrF
  OGLUM12G20290.1 185 EEPVYVNAKQYNAILRRRQSRAKAESEKKL-VKGRKPYLHESRHQHALKRARGAGGRF 241
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-35183244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.332184244IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-27186241IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-23187209IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860189209IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-23218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAQITRAPPL SFSETNPKKI KTKKINSSPL LISSPSPLLS PSPSPSPSPS PPLAAGGDRV  60
RRDRLAGRVP SPSRTSARLA SSSRKCGNHG ADERQKQQRQ GEPEDQQEAS VTSTDSHTMV  120
ATPSTDYATP YAHHDMAHAM GQIAYANIDP YYGSLYAAYG GQPMMHPPLV GMHPAGLPLP  180
TNAIEEPVYV NAKQYNAILR RRQSRAKAES EKKLVKGRKP YLHESRHQHA LKRARGAGGR  240
FLNSKSDDKE EHSDSSSRDK QDGVAPRDSG QPSTSPSSKG ASSAKQNKKS KTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21184248165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880280.0AB288028.1 Oryza sativa Japonica Group OsHAP2B mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0651630.0AK065163.1 Oryza sativa Japonica Group cDNA clone:J013002C07, full insert sequence.
GenBankHQ8396730.0HQ839673.1 Oryza sativa Japonica Group NF-Y transcription factor 22 (NF-Y22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618405.11e-151nuclear transcription factor Y subunit A-7 isoform X2
TrEMBLA0A0E0BV500.0A0A0E0BV50_9ORYZ; Uncharacterized protein
STRINGOGLUM12G20290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65553853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.22e-37nuclear factor Y, subunit A7