PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20570.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 395aa    MW: 41229.4 Da    PI: 7.9291
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.51e-331442831112
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasn 84 
                      aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++          ss+++  + +++++s++++
  OGLUM12G20570.1 144 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpaaaSSPPP-PAADDAEVSTSET 236
                      6899***************************************************************9999877533333.2233333333333 PP

              TCP  85 sssg...................kaaksaakskksqksaasalnlak 112
                      s+s+                    ++++++ sk+ q++++++l++ +
  OGLUM12G20570.1 237 SKSSvlslanapcdngggafaelLHCSNTNGSKPLQQQQQATLAYYA 283
                      33336777788888999999999555555533333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-32146274IPR005333Transcription factor, TCP
PROSITE profilePS5136931.678147205IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVLCAGHIHE VWNIRGLFCK IELLSSACAE AIRPASSSSS CSCSLQGAQL TASERFRVAQ  60
SELLLVGPSN SGASSPGSSV SIDPLQTKRR RISHELAQAS AMEEVGGGGK ERKRPRGSLV  120
GVSGGGASAA TAAAWRTSRV ARAAAGGKDR HSKVVTSRGL RDRRVRLSVP TAIAFYDIQD  180
RLGVDQPSKA IEWLIRAAAA AIDALPSLDC SFALPAAASS PPPPAADDAE VSTSETSKSS  240
VLSLANAPCD NGGGAFAELL HCSNTNGSKP LQQQQQATLA YYAAAQSAHM AAPMSFEMMA  300
MPPHLAFSQE QQQHATVAAF DRGTLQSNAS LWPPPPPPPS QHPFLLQRFA AAPAEVAGLP  360
RRWRRCCSGG DDQWGGAEAA ALGLQGGEED MTKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-21152206155Putative transcription factor PCF6
5zkt_B3e-21152206155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718080.0AB071808.1 Oryza sativa Japonica Group mRNA for transcription factor PCF8, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.11e-175transcription factor PCF8
SwissprotA2ZMR91e-135PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0BVA20.0A0A0E0BVA2_9ORYZ; Uncharacterized protein
STRINGOGLUM12G20570.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-19TCP family protein