PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20870.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 207aa    MW: 22777.8 Da    PI: 9.042
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.41.3e-7261775170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......lleelkveeenlksnvekeesa 92 
                        +eqvCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+  ++  +a ++ +++  +e        ++ +  e  ++   ++++  
  OGLUM12G20870.1   6 APAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQDHHHHHLQEsglsgcFRDQSGYPEFGFSAASSSSKLR 99 
                      5689**********************************************99998665444444444777766777777777777777777777 PP

            YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          ++ ++s +++++  ++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  OGLUM12G20870.1 100 LPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 177
                      777888888988888888777889****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.4E-747177IPR006780YABBY protein
SuperFamilySSF470953.01E-8122171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-5124171IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSAQIAPAEQ VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMHSAPA  60
LQDHHHHHLQ ESGLSGCFRD QSGYPEFGFS AASSSSKLRL PPAAAAMVSY SQQNQQLEQA  120
LHARPPEKRQ RVPSAYNRFI KEEIRRIKAN NPDISHREAF STAAKNWAHY PNIHFGLSPG  180
HEGGKKLVDV DPIPTAPSSK KIQGFYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740180.0AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds.
GenBankAK1049180.0AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence.
GenBankCT8291390.0CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence.
GenBankFJ9401950.0FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618575.11e-155protein YABBY 6
SwissprotQ2QM171e-156YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0E0BVE41e-153A0A0E0BVE4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FE721e-153A0A0E0FE72_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G0X71e-153A0A0E0G0X7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RK591e-153A0A0E0RK59_ORYRU; Uncharacterized protein
TrEMBLB7EXC71e-153B7EXC7_ORYSJ; YABBY protein
TrEMBLB8BN251e-153B8BN25_ORYSI; Uncharacterized protein
TrEMBLI1R7Z41e-153I1R7Z4_ORYGL; Uncharacterized protein
STRINGOGLUM12G20870.11e-154(Oryza glumipatula)
STRINGORUFI12G21410.11e-154(Oryza rufipogon)
STRINGOS12T0621100-011e-154(Oryza sativa)
STRINGORGLA12G0165000.11e-154(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-59YABBY family protein