PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G21540.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 244aa    MW: 26931.4 Da    PI: 9.2733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G21540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.3e-181765148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+e+de+l  +++q+G+g +W + +r++g++R++k+c++rw++yl
  OGLUM12G21540.1 17 RGAWTAEDDERLRSYIQQHGTGgNWMALPRKVGLRRCGKSCRLRWLNYL 65
                     89*********************************************97 PP
2Myb_DNA-binding414.5e-1372114246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+++  +d l++ +++  G++ W++Ia++++ gRt++++ ++w++
  OGLUM12G21540.1  72 GAFSDHDDRLILALHAAVGTR-WSLIAAHLP-GRTDNHLNNYWNN 114
                      799******************.*********.************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5711265IPR017930Myb domain
SuperFamilySSF466894.08E-2516112IPR009057Homeodomain-like
SMARTSM007172.8E-121667IPR001005SANT/Myb domain
PfamPF002491.7E-151765IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-211872IPR009057Homeodomain-like
CDDcd001671.10E-91965No hitNo description
PROSITE profilePS5129419.47866120IPR017930Myb domain
SMARTSM007177.4E-1070118IPR001005SANT/Myb domain
PfamPF002491.7E-1072114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-1973118IPR009057Homeodomain-like
CDDcd001671.28E-573106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSSACCDK AAVKPKRGAW TAEDDERLRS YIQQHGTGGN WMALPRKVGL RRCGKSCRLR  60
WLNYLRPGIR HGAFSDHDDR LILALHAAVG TRWSLIAAHL PGRTDNHLNN YWNNKKKKTP  120
PLLLAAHQLH VASTSSGGMH VGVGEGHGYD DVFAAAHSLS STAATSFSSG GATELDEIFR  180
STGTSGGDCS SSAQTRSTDD ALMMMMMMMM MMNWHNHQNQ LQLQGELQGV QQQQQQFGFG  240
MPYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21171187106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7318877e-99AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8318097e-99AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149687e-99AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126207e-99CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877978.11e-74LOW QUALITY PROTEIN: transcription factor RAX1-like
TrEMBLA0A0E0BVL90.0A0A0E0BVL9_9ORYZ; Uncharacterized protein
STRINGOGLUM12G21540.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3871133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-53myb domain protein 36