PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G00060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 23037 Da    PI: 10.0073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G00060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-083485554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                      +e+ErrRR++++    +L +l+Pk    k ++   +    L +A  YIk+L
  OMERI01G00060.1 34 RKEMERRRRQDMKGLCIKLASLIPKEHysKSKAATRTQLGSLDEAAAYIKKL 85
                     579**********************554777777799999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-92397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.4932985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-113396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-53591IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-63585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.6200.001119178IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEEKAGGGGG GRRRSRATSS SGSGASSTAA AAERKEMERR RRQDMKGLCI KLASLIPKEH  60
YSKSKAATRT QLGSLDEAAA YIKKLKERVD ELHHKRSMHI TSSGGVVAAA AGQSTSGGGS  120
EEDMTTAAAA AVEVKVRQHV QEGSLISLDV VLICSAARPV KFHDVITVLE EEGADIISAN  180
FSLAAHNFYY TIYSRAFSSR IGIEASRISE RLRALA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-134CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647775.12e-91transcription factor bHLH167 isoform X1
RefseqXP_015647782.12e-91transcription factor bHLH167 isoform X2
TrEMBLA0A0E0BVV41e-152A0A0E0BVV4_9ORYZ; Uncharacterized protein
STRINGOMERI01G00050.11e-153(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-11bHLH family protein