PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G00100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 229aa    MW: 24398.5 Da    PI: 9.8379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G00100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-0836110455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P a                        + +++ ++  + Le+A  YIk+L+
  OMERI01G00100.1  36 ERKDVEKNRRLHMKGLCLKLSSLIPAAAaaaaaaprrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 110
                      56899*********************666********************76666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.20432109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-934122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-1134123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-636109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006938115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MKSRKNSGST KAAGSCHTSS SGGGGNCYSS SSSKMERKDV EKNRRLHMKG LCLKLSSLIP  60
AAAAAAAAAP RRHHHHYSTS SSSSPPSSTK EAVTQLDHLE QAAAYIKQLK GRIDELKKRK  120
QQAAALTSTT SNGSGNGGGG MPVVEVRCQD GTLDVVVVSE AIGEERERAV RLHEVIGVLE  180
EEGAEVVNAS FSVVGDKIFY TLHSQALCSR IGLDASRVSH RLRNLLLQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347290.0CT834729.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622948.11e-116transcription factor bHLH168
TrEMBLA0A0E0BVW11e-165A0A0E0BVW1_9ORYZ; Uncharacterized protein
STRINGOGLUM01G00630.11e-134(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.17e-19bHLH family protein