PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G00290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 290aa    MW: 30163.9 Da    PI: 7.8499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G00290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09207250755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  OMERI01G00290.1 207 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 250
                      67799*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-14198260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.002200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-12200254No hitNo description
Gene3DG3DSA:4.10.280.107.0E-12200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6207250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMAAQASSKR GMLLPREAVL YDNEPSMAPL EILGYHGNGV GGGGCVDADH YYSWSGSSSS  60
SSSSVLSFDQ AAVGGGGCAR QLAFHPGGDD DDCAMWMDAG AGAMVENTSV VAGGGNNYCH  120
RLQFHGGAAG FGLASPGSSV VDNGLEIHES NISKPPPPAA KKRACPSGEG RAAGKKQCRK  180
GSKPNKAASA SSPSPSPSPD KEQPQSAAAK VRRERISERL KVLQDLVPNG TKVDLVTMLE  240
KAINYVKFLQ LQVKVLATDE FWPAQGGKAP ELSQVKDALD AILSSQHPSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085870.0AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643698.11e-170transcription factor bHLH83
TrEMBLA0A0E0BVZ30.0A0A0E0BVZ3_9ORYZ; Uncharacterized protein
STRINGOMERI01G00280.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-46ROOT HAIR DEFECTIVE6