PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G01270.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 620aa    MW: 67358.6 Da    PI: 7.2707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G01270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-17468512147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ 
  OMERI01G01270.1 468 RRSFSKEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNSN 512
                      6789******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118054.4E-14846379IPR021763Protein of unknown function DUF3326
SuperFamilySSF466894.68E-14462517IPR009057Homeodomain-like
PROSITE profilePS5129422.718463517IPR017930Myb domain
SMARTSM007171.5E-16467515IPR001005SANT/Myb domain
PfamPF002493.3E-15468512IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19470512IPR009057Homeodomain-like
CDDcd001671.09E-5488513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MALHLPRPFL RPSPPPPPRP TRRSSRAHCL APSASARGPS FRRPYTSVLV VPTGVGAAVG  60
GFAGDALPVA RALGAVADCV ISHPNVLNAA MLYWPMPNTL YVEGYALDRF AEGSWALQPV  120
HQNKVGLVLD SGIEEELRLR HLQVADAARA SLGLPVVEYI VTDTPLEIKT WFDPKCGKST  180
GSVGNSDSLL RAVEALVNRS DVNAVAVVAR FPDDDPEDSD CYREGKGVDL LAGVEAIISH  240
LIVKKFKIPA AHAPAVLPPV LSPSVSPRSA SEEIGHTFLP CVLAGLSNAP QYVMRRNGNM  300
DNGCIVASDV DSVILPKDAC GGDGTIAFAR TARKNKPLII TVQENETVLD DTPDKFNIEA  360
LNVQNYWEAI GVIAAHKAAS SVSLSYLLLI YWSFLSVAPL ESSISRMLTC QLLRRSLAVI  420
CANTSAMRCP RRRSSASLQV SSQPPPRLIS EHLPAGDPPS PLSRSRKRRS FSKEEDELLL  480
KLHALLGNRW SLIAGRLPGR TDKEVMNHWN SNLIKPMDNT TTDHPPSLHV DENRRRRRRL  540
RSEPHDDEPD AKHPGHDSSS SSKDINGHEC TVADDASSCN QDDNRAVAEL NLELTLSTPC  600
IYLLLGQDRE DGSKSNHGLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464469SRKRRS
2533540RRRRRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878284.10.0uncharacterized protein LOC4325987
SwissprotP084521e-108Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBLA0A0E0BWE80.0A0A0E0BWE8_9ORYZ; Uncharacterized protein
STRINGONIVA01G01950.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-12MYB family protein