PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G01850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 288aa    MW: 31640.9 Da    PI: 3.9741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G01850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34e-12131571128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86 
                      lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p     +v ++++ + yfF  + +     + + r +  g W   
  OMERI01G01850.1  13 LPWGYRFRPSDRQIIANYLGPMALHGAdslPQRGDVVEGVDVFATRPAAIPFeprrHVFGRDEvRAYFFGDQPTD----S-RGREVPGGAWLPC 101
                      689******************988877575445578**************9546653333344377999887554....3.4577899***987 PP

              NAM  87 gk...dkevlsk...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                      g    dk+ +s    +ge+v  ++   f           ++a ++ + +W m+eyrl
  OMERI01G01850.1 102 GGgggDKA-YSGgadGGEAVAYRRKYEFRaadeeadraGEEAATPARPRWRMKEYRL 157
                      65332444.4435778888*********97777665532467777899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-204186IPR003441NAC domain
PROSITE profilePS5100521.37913187IPR003441NAC domain
PfamPF023659.1E-1014157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASSAHIAAV LNLPWGYRFR PSDRQIIANY LGPMALHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFEPRRHV FGRDEVRAYF FGDQPTDSRG REVPGGAWLP CGGGGGDKAY SGGADGGEAV  120
AYRRKYEFRA ADEEADRAGE EAATPARPRW RMKEYRLNKS AAAFRRAYAQ PNPKANMDCV  180
VREIYTKAVP PPTPPSGRSG DEEMQEGSDY SVMDEDDDEL VDYLLQDFED GNFDEDQDQS  240
AAAEDGDYSD EDQDQDQPAA AEDGDYSDED QDQPAAAEDG DYSDEDEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.10.0NAC domain-containing protein 67-like
TrEMBLA0A0E0BWP20.0A0A0E0BWP2_9ORYZ; Uncharacterized protein
STRINGOMERI01G01870.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231