PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G03530.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 297aa    MW: 33183.4 Da    PI: 6.5113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G03530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-183478147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+e+++da  ++G + Wk+I +++g ++t  q++s+ qky
  OMERI01G03530.1 34 RERWSEEEHERFLDALIMYGRD-WKKIEEHVG-TKTTIQIRSHAQKY 78
                     78******************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-182884IPR009057Homeodomain-like
PROSITE profilePS5129420.7692983IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-93185IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-183281IPR006447Myb domain, plants
SMARTSM007171.3E-123381IPR001005SANT/Myb domain
PfamPF002492.1E-143478IPR001005SANT/Myb domain
CDDcd001672.37E-103679No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDRNTNNNSN SNSSSSSEMP GKKARKPYTI TKPRERWSEE EHERFLDALI MYGRDWKKIE  60
EHVGTKTTIQ IRSHAQKYFL KVQKMGLAAG LPPQYPRRRL VMQQQQQSSP AVSSSVAATA  120
ILHGQPRCLP PHHNVAIQSS IGWDCPGNLE WASTSGTAAW GNHHGLIEPS AAFDSFPGES  180
SFMGAASFSN MNMDWSGTTS EMATASIVQD ETIELPLSPD DMQFAQVYRF IGDIFDPDSP  240
CPVETHLQKL KNMDDITVKT ILLVLRNLED NLLSPQFEPI RRLLSTYDPN LGLSGHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069690.0AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646001.10.0protein REVEILLE 8
TrEMBLA0A0E0BXC80.0A0A0E0BXC8_9ORYZ; Uncharacterized protein
STRINGOMERI01G03500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-47MYB_related family protein