PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G04790.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 655aa    MW: 71887.5 Da    PI: 8.0395
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G04790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-065782126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+ C +f  +G C + d C+FaHg
  OMERI01G04790.1 57 YKTRVCETFVTSGRCMFEDGCTFAHG 82
                     9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-145188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-95588IPR000571Zinc finger, CCCH-type
SMARTSM003560.00165683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.455684IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.206139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.42139166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4142164IPR000571Zinc finger, CCCH-type
SMARTSM007024.6E-17419598IPR006620Prolyl 4-hydroxylase, alpha subunit
SMARTSM002540.0037614655IPR003582ShKT domain
PROSITE profilePS516708.775615655IPR003582ShKT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0031418Molecular FunctionL-ascorbic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAGRGGMVEW EVGRRRDSED VIVLSPGPPA RRRPPPVKAV EPESGGFAYE PPEKLFYKTR  60
VCETFVTSGR CMFEDGCTFA HGDEELRPSL TACAGGWRKP SPSLSAAAPP VAVAPTPPPA  120
QVVHELLARG SGSGGGGHRA ITKVCFEFRD KGTCYFGETC AFPHVSAAEI RQGSRLSSMS  180
SSSWEMPARR SVAVTVPRTF VSVPPVAPPP PPPHYRVNNS SSYNAASMAA AAPAASDANL  240
VAQQPPPEQG GRKMTRLEML SLKKMTGIYG DWLEGAREMR IWCSLVQVKR RRPEEGKRGR  300
RMGSGIGAVL VLVAAWLTFA PPGALASSRS IKLWMNRFDY RGLIQPFGGI CEIPIIKLRP  360
YQLNDYNQEA VEKGQHRWGK WFDLSIAQEK LVNSTGGSTA SSSHLVFDPS KSNRLSWHPR  420
IFLYEGFLSD MECDHLVSMG CGNMESSLAF TDGDRNSSYN NIEDIVVSKI EDRISLWSFL  480
PKENGESIQV LKYGVNRSGS IKEEPKSSSG AHRLATILIY LSDVKQGGET VFPRSEMKDA  540
QAKEGAPSQC SGYAVRPAKG NAILLFNLRP DGETDKDSQY EECPVLEGEK WLAIKHINLR  600
KFDYPKSSLA SEDECTDEDD RCVSWAASGE CDRNPVFMIG SSDYYGSCRK SCRVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jig_A1e-3041459915217PROLYL-4 HYDROXYLASE
2jig_B1e-3041459915217PROLYL-4 HYDROXYLASE
2jij_A1e-3041459924226PROLYL-4 HYDROXYLASE
2jij_B1e-3041459924226PROLYL-4 HYDROXYLASE
2jij_C1e-3041459924226PROLYL-4 HYDROXYLASE
2v4a_A1e-3041459924226PROLYL-4 HYDROXYLASE
2v4a_B1e-3041459924226PROLYL-4 HYDROXYLASE
2v4a_C1e-3041459924226PROLYL-4 HYDROXYLASE
2v4a_D1e-3041459924226PROLYL-4 HYDROXYLASE
3gze_A1e-3041459916218Predicted protein
3gze_B1e-3041459916218Predicted protein
3gze_C1e-3041459916218Predicted protein
3gze_D1e-3041459916218Predicted protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076620.0AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622130.10.0probable prolyl 4-hydroxylase 6 isoform X2
TrEMBLA0A0E0BXV20.0A0A0E0BXV2_9ORYZ; Uncharacterized protein
STRINGORUFI01G05080.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1354177