PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G05960.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 375aa    MW: 39849 Da    PI: 9.2647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G05960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09106147647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  OMERI01G05960.2 106 KEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 147
                      6****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
SMARTSM007176.3E-5100150IPR001005SANT/Myb domain
PROSITE profilePS5129411.645101152IPR017930Myb domain
CDDcd001675.91E-6106148No hitNo description
PfamPF002494.1E-7106147IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-14106151IPR006447Myb domain, plants
SuperFamilySSF466895.71E-12106152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-8106146IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPA RGGGGGGGVR LFGVRLTSPP EVAMKKSASM SCIVSSLGGG  60
GGSGGSSPAG RGGGGGGGGG EGAAGYASDD PTHASCSTNG RAERKKEEHR MFLMGLQKLG  120
KGDWRGISRN FVVSRTPTQV ASHAQKYFIR QTNSSRRKRR SSLFDMVPEM PMDESPVVIE  180
QLMLHSTQDE ATSSNQLPIS HLVKQKEPEF VRHLSDLQLR KHEESEFTEP SLAALDLEMN  240
HAAPFKTKSV LTMPTFYPAL IPVPLTLWPP NVANVGESGT NHEILKPTPV NGKEVINKAD  300
EVVGMSKLTI GDGSSNSIEP SALSLQLTGP TNTRQSAFHV NPPMAGPDLN KRNNSPIHAV  360
IPEDSEAMAG KSVVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716110.0AK071611.1 Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621787.10.0transcription factor MYBS3-like
TrEMBLA0A0E0BYF50.0A0A0E0BYF5_9ORYZ; Uncharacterized protein
STRINGOMERI01G06020.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-67MYB_related family protein