PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06230.3
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 488aa    MW: 51870 Da    PI: 8.505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06230.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-067597123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++Cgk F r  nL+ H r H
  OMERI01G06230.3 75 YVCEICGKGFQRDQNLQLHRRGH 97
                     9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-77497No hitNo description
PROSITE profilePS5015711.8017597IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-67597IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00697597IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM0035544117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4140172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.1E-7147172No hitNo description
SMARTSM00355150152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMLKDLAEIQ QQQLLAAAAE ENMSNLTSAS GDQASVSSHP APPPAKKKRS LPGNPDPEAE  60
VIALSPRTLM ATNRYVCEIC GKGFQRDQNL QLHRRGHNLP WKLKQRNPKE VVRKKVYVCP  120
EAGCVHHDPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVHSDWKAH SKVCGTREYR  180
CDCGTLFSRR DSFITHRAFC DALAEESARA VTAAAAVAGG GQQQHHGGGM LFSQVADVLD  240
HQAAMAMGGH GLMQELCLKR EQQQFAPSWL TAQQQQHHQQ LEAMAGAGNP AAMYGSARLD  300
QEFIGSSTPE SGGAQAGLSF GFSSTSSAQP HAASSAHMSA TALLQKAAQM GATLSRPSSH  360
AHMAPAAAAS THNSSSSAAT TNAPPPPPPP TSNVSSTCVG AGGYGLAFEA SHFTGADESS  420
RARSDRDTGN GVAGAGNDGL TRDFLGLRAF SHGDIMSMAG FDPCMSTTSA SSAAPYDHHH  480
HSNKPWHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34148209364Zinc finger protein JACKDAW
5b3h_F8e-34148209364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101114KLKQRNPKEVVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056630.0AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622491.10.0protein indeterminate-domain 7
TrEMBLA0A0E0BYK10.0A0A0E0BYK1_9ORYZ; Uncharacterized protein
STRINGOMERI01G06290.20.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-110indeterminate(ID)-domain 7