PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06290.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 213aa    MW: 22493.1 Da    PI: 9.3061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07184209429
                      HHHHHHHHHHHHHHHHHHHHHCTSCC CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk 29 
                       h + Er+RR++iN +f  L+ +lP+
  OMERI01G06290.1 184 QHTMSERKRREKINGSFVALKAVLPP 209
                      599**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-7178209No hitNo description
SuperFamilySSF474593.49E-7179211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.131180213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-6182209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5184209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG  60
DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCSPE SSAAAAPELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAAA AEAAPALPSD  180
NQLQHTMSER KRREKINGSF VALKAVLPPG SKY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERKRRE
2189194RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034170.0AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635156.11e-105uncharacterized protein LOC107280684 isoform X1
RefseqXP_025879409.11e-105uncharacterized protein LOC107280684 isoform X2
TrEMBLA0A0E0BYK71e-154A0A0E0BYK7_9ORYZ; Uncharacterized protein
STRINGOMERI01G06360.11e-154(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-10bHLH family protein