PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06300.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 100aa    MW: 11187.7 Da    PI: 9.6282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06300.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09248855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC.HHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdriNsafeeLrellPk.askapskKlsK.aeiLekAveYIksLq 55
                      Er+RR++iN +f  L++     +   p+ Kl+K ++iL +A eY+k L+
  OMERI01G06300.2  2 SERKRREKINGSFVALQSRPYVlP---PGSKLDKtSSILIRAREYVKFLE 48
                     6****************9855534...8999666489**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-12169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.93E-8152No hitNo description
PROSITE profilePS508889.712147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-4153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSERKRREKI NGSFVALQSR PYVLPPGSKL DKTSSILIRA REYVKFLESK LSELDEKNRE  60
LEARLASSPA VVAKNDEEEA AAPPEAGGEV KRERLFTTGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127ERKRRE
238RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034173e-96AP003417.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0498B01.
GenBankAP0149573e-96AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.14e-36putative transcription factor bHLH041
TrEMBLA0A0E0BYK81e-63A0A0E0BYK8_9ORYZ; Uncharacterized protein
STRINGORUFI01G06700.13e-41(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-14bHLH family protein