PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06310.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 422aa    MW: 44199.4 Da    PI: 7.2351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.4e-12235280555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  OMERI01G06310.1 235 HMISERKRREKLNDSFLALKAVLPPG-----SKKDKTSILIRAREYVKSLE 280
                      8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-16232298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-13232284No hitNo description
Gene3DG3DSA:4.10.280.102.1E-12233278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9235280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-12236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146863.80E-4271299No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-4279298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEDCSSWIHG YANANATGGN NGFMCGYAAS CSPVEFQQQQ QLISMQMGMD DESAVYDGAS  60
MVDDLLIPSS SPHHAGAGSF QYSSSTTSSS ASFRSASVSC SPESSAAATT HFLGPPASAA  120
AFHYPEVSSQ APLPLPLPPY EPQHGQYTVL SPPPPELPAT VGAFRRYARH LRPRRLPKPG  180
ACGQRMFKTA MSVLTKMHVA ATYNRQYYYQ QAVAAASASA AEAAAAPPSG NQLQHMISER  240
KRREKLNDSF LALKAVLPPG SKKDKTSILI RAREYVKSLE SKLSELEEKN RELEARLASR  300
PAAAKNDKGE MAAAPAPEAG NETKREDLVE IEVTTTSGGG ATGAADAAAA GGDQETSCTL  360
NVDLRGGGGG GGGGMSTTDV VLRTLQCLRE QIGDGASLVA MSTSAGSGGR PPRANLTLQL  420
KV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243ERKRRE
2239244RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029640.0AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626911.10.0uncharacterized protein LOC4327325
TrEMBLA0A0E0BYL00.0A0A0E0BYL0_9ORYZ; Uncharacterized protein
STRINGOMERI01G06380.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-16bHLH family protein