PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G06670.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family DBB
Protein Properties Length: 362aa    MW: 37849.1 Da    PI: 6.9547
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G06670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.6e-06444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e  e++  C  ++  lC+ C l+ H        H +
  OMERI01G06670.1  4 LCSACEAAEARVLCCADDAALCARCDLHVHAAnrlagkHHR 44
                     7******99*********************55678888554 PP
2zf-B_box30.57.6e-105798237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     ++++C+ +++ ++ +fC +++ llC+ C ++ H        H
  OMERI01G06670.1 57 SPPTCDICQDAHAYFFCVEDRALLCRACDVAVHTAnalvsaH 98
                     6799***************************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.566147IPR000315B-box-type zinc finger
SMARTSM003363.9E-8147IPR000315B-box-type zinc finger
CDDcd000216.16E-6344No hitNo description
PROSITE profilePS501199.6756103IPR000315B-box-type zinc finger
SMARTSM003368.2E-1656103IPR000315B-box-type zinc finger
PfamPF006433.6E-85890IPR000315B-box-type zinc finger
CDDcd000216.53E-961103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD DAALCARCDL HVHAANRLAG KHHRLPLLSS SSSSSSSPPT  60
CDICQDAHAY FFCVEDRALL CRACDVAVHT ANALVSAHRR FLLTGVHVGL DAAAADDDKH  120
PPHPLSSSPP RNTAPPPPQP PCTRKRSPSP IYSDDNVIDW ATGNLPDWSL VDEQFTAPAP  180
PVRQAAAAEQ PVVVTKTQPK RASRGPVTAG TAAAVFGNLA GLAAGSPDWP LNEFFGFADF  240
SSGFGFTENG TSKADSGKIG SMDGSPNGGR SWSSSSSSSS AAAAGGQDFF GQVPEVHWAV  300
PELPSPPTAS GLHWQRDPRY GGGGATDAGA VFVPDISSPE NPFRCFATAG AGDHTRKRRR  360
RC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355359RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031050.0AP003105.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0489A05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630321.11e-178B-box zinc finger protein 22
TrEMBLA0A0E0BYS50.0A0A0E0BYS5_9ORYZ; Uncharacterized protein
STRINGOMERI01G06780.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-30light-regulated zinc finger protein 1