PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G08690.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 943aa MW: 103068 Da PI: 6.0411

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G08690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.6	1.2e-28	596	647	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ OMERI01G08690.1 596 AEKTISLDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 647 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.541	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.5E-22	839	935	No hit	No description
SMART	SM00666	7.6E-25	849	931	IPR000270	PB1 domain
Pfam	PF00564	1.2E-15	849	930	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.3E-25	849	930	No hit	No description
PROSITE profile	PS51745	19.198	849	931	IPR000270	PB1 domain
CDD	cd06407	1.38E-33	850	930	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MEVDPSSSSP GAGEGGVGGG GGDLWPFDSL TTSLLFSSVS ASPQPLPASS SSWLTPPSPL 60 WLFDERQLLP LDMGTPAAPP TAPPAEAAAV AAAVVEEVHR TRSGNSDTTS KRVDQINSKW 120 QFHLSIDDNT DSSCLFKERL TQALRYFKES TDQHLLVQVW APVKSGDRYV LTTSGQPFVL 180 DQQSIGLLQY RAVSMMYMFS VDGENAGELG LPGRVYKQKV PEWTPNVQYY SSTEYPRLNH 240 AISYNVHGTV ALPVFDPSVQ NCIAVVELIM TSKKINYAGE VDKVCKALEA VNLKSTEILD 300 HPNVQICNEG RQSALVEILE ILTVVCEEHK LPLAQTWVPC KYRSVLAHGG GVKKSCLSFD 360 GSCMGEVCMS TSDVAFHVID AHMWGFRDAC VEHHLQKGQG VSGKAFIYRR PCFSKDISQF 420 CKLEYPLVHY ARMFGLAGCF AICLQSMYTG DDDYILEFFL PPNCRNEYDQ NALLESILAR 480 MKKCLRTLKV VGNGDTNEVC LQISNVLIIE TEDLKTNVHF ENSEGCFRES PESNGSQRAH 540 EVDNGDNKVS VMSERHLLAD DNSQNNGASV GRPNGSGASD SLHKSNKPPE RRRGKAEKTI 600 SLDVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKQVIES 660 VQGSDAAFNL TSITGPLPIP VGPSSDSQNL EKASPNKVAE LSNLAVEGDR DSSLQKPIEN 720 DGNLAILMSQ QGFIDANNNL QLEADKASHS RSSSGEGSIN SRTSEASCQG SPANQTFVCK 780 PIASTFAEPQ LIPEAFTKEP FQEPALPLSR MLIEDSGSSK DLKNLFISAV DQPFLARSSN 840 LVLMQNSGTV TIKASFKEDI VRFRFPCSGS VTALKDEVAK RLRIDVGMFD IKYLDDDHEW 900 VKLACNADLE ECMEISRHSG SHVIRLLVSD VSAHLGSSCG SSG

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MEVDPSSSSP GAGEGGVGGG GGDLWPFDSL TTSLLFSSVS ASPQPLPASS SSWLTPPSPL  60
WLFDERQLLP LDMGTPAAPP TAPPAEAAAV AAAVVEEVHR TRSGNSDTTS KRVDQINSKW  120
QFHLSIDDNT DSSCLFKERL TQALRYFKES TDQHLLVQVW APVKSGDRYV LTTSGQPFVL  180
DQQSIGLLQY RAVSMMYMFS VDGENAGELG LPGRVYKQKV PEWTPNVQYY SSTEYPRLNH  240
AISYNVHGTV ALPVFDPSVQ NCIAVVELIM TSKKINYAGE VDKVCKALEA VNLKSTEILD  300
HPNVQICNEG RQSALVEILE ILTVVCEEHK LPLAQTWVPC KYRSVLAHGG GVKKSCLSFD  360
GSCMGEVCMS TSDVAFHVID AHMWGFRDAC VEHHLQKGQG VSGKAFIYRR PCFSKDISQF  420
CKLEYPLVHY ARMFGLAGCF AICLQSMYTG DDDYILEFFL PPNCRNEYDQ NALLESILAR  480
MKKCLRTLKV VGNGDTNEVC LQISNVLIIE TEDLKTNVHF ENSEGCFRES PESNGSQRAH  540
EVDNGDNKVS VMSERHLLAD DNSQNNGASV GRPNGSGASD SLHKSNKPPE RRRGKAEKTI  600
SLDVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS LSKLKQVIES  660
VQGSDAAFNL TSITGPLPIP VGPSSDSQNL EKASPNKVAE LSNLAVEGDR DSSLQKPIEN  720
DGNLAILMSQ QGFIDANNNL QLEADKASHS RSSSGEGSIN SRTSEASCQG SPANQTFVCK  780
PIASTFAEPQ LIPEAFTKEP FQEPALPLSR MLIEDSGSSK DLKNLFISAV DQPFLARSSN  840
LVLMQNSGTV TIKASFKEDI VRFRFPCSGS VTALKDEVAK RLRIDVGMFD IKYLDDDHEW  900
VKLACNADLE ECMEISRHSG SHVIRLLVSD VSAHLGSSCG SSG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067319	0.0	AK067319.1 Oryza sativa Japonica Group cDNA clone:J013106K21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613020.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0E0BZP1	0.0	A0A0E0BZP1_9ORYZ; Uncharacterized protein
STRING	OMERI01G08690.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7