PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G09230.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 308aa    MW: 32531.6 Da    PI: 8.3513
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G09230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.26.6e-234288450
           RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                     ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 
  OMERI01G09230.1 42 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 88
                     6899*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.06326110IPR003035RWP-RK domain
PfamPF020425.0E-214388IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCAAPMASTA QPQQQQEQQP PAAAAAPTPA SEAQPQKPTR VSLSYEEISK LFSLPIAEAA  60
SILGVCTSVL KRICRSHGIV RWPYRKLVSG KSGDDTKNAE REKAKGLLEI SKVAKQKALS  120
ASGLSTVSPG AFQGVAKSQQ GSSKAGQVSP PGKQNVLGGS AILSYGTQTK GIPTYMDDFK  180
YGFPSSGLSL QTMKWWGTDS HTETTPAKDD NGEAPESANE ASKGMTDDEL DWGADEAEAE  240
ADADSAITTE PSAQLCSLRR KAVDDGRKLL TGKSCGGLEL CRLNKRQKMA LAQVFGASLP  300
EQLRSKLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0589840.0AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625714.10.0uncharacterized protein LOC4326758
TrEMBLA0A0E0BZX00.0A0A0E0BZX0_9ORYZ; Uncharacterized protein
STRINGOPUNC01G09100.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-10RWP-RK domain-containing protein